Data2Dynamics Software

Contact: Andreas Raue - andreas.raue@fdm.uni-freiburg.de

Cite:

Video: See how easy model calibration can be using D2D Software in this YouTube Video. The video is recorded in real time on a dual core laptop with the Bachmann et al. 2011 example using the first data set.

Features

Major purpose: Establishing ODE models based on experimental data. The software is designed for biochemical reaction networks, but is not limited to this.

Key feature: Reliable and efficient parameter estimation techniques and statistical assessment of parameter-, measurement- and prediction uncertainties.

Some special features:

A more comprehensive description of features is available features page in the Wiki.

Awards

The software was awarded twice as best performer in the Dialogue for Reverse Engineering Assessments and Methods (DREAM). 2011 in the Estimation of Model Parameters Challenge (DREAM6) and 2012 in the Network Topology and Parameter Inference Challenge (DREAM7). Read more about this in: Steiert B., et al. Experimental Design for Parameter Estimation of Gene Regulatory Networks. PLoS ONE 7(7), e40052, 2012

Further topics

Please read the Wiki if you are interested in details.

Copyright © 2016 D2D development team. All rights reserved. Copyright text and third party software license information.